@hackage BiobaseFasta0.3.0.1

streaming FASTA parser

Categories
- Bioinformatics
License
BSD-3-Clause
Maintainer
choener@bioinf.uni-leipzig.de
Links
Versions
- 0.4.0.1 Fri, 4 Jun 2021
- 0.4.0.0 Thu, 3 Jun 2021
- 0.3.0.1 Mon, 17 Jun 2019
- 0.3.0.0 Wed, 27 Mar 2019
- 0.2.0.0 Wed, 12 Dec 2018
- 0.0.1.0 Fri, 6 Dec 2013

Installation
In your cabal file:
Tested Compilers
- 8.4.4
Dependencies (9)
- base >=4.7 && <5.0
- bytestring
- BiobaseTypes >=0.2.0 && <0.2.1
- DPutils >=0.1.0 && <0.1.1
- lens >=4.0
- resourcet >=1.0
Dependents (5)
@hackage/RNAlien, @hackage/DnaProteinAlignment, @hackage/acme-everything, @hackage/BiobaseHTTPTools, @hackage/BlastHTTP

BiobaseFasta

A Haskell library for FASTA-file handling.

The version does streaming using the 'streaming' library.

The library is, in general, in a "preview" state. In cases where you need to scan large FASTA files fast and with low memory overhead, the functions within should already be useable enough.

The wikipedia has information on the format:
http://en.wikipedia.org/wiki/FASTA_format

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/

@hackage BiobaseFasta0.3.0.1

Categories

License

Maintainer

Links

Versions

Installation

Tested Compilers

Dependencies (9)

Dependents (5)

BiobaseFasta

A Haskell library for FASTA-file handling.

Contact