@hackage BiobaseHTTPTools1.0.0

Tools to query Bioinformatics HTTP services e.g. Entrez, Ensembl.

BiobaseHTTP provides tools to interface the Bioinformatics REST services, currently Entrez, Ensembl.

Usage instructions can be found in the README

Currently following Tools are included:

  • FetchSequences: Retrieves sequence in fasta format

  • AccessionToTaxId: Converts NCBI accession number to taxonomy id

  • GeneIdToGOTerms: Retrieve GOterms for a Ensembl GeneId

  • GeneIdToUniProtId Retrieves UniProtId for a Ensembl GeneId