@hackage bein0.3.3

Bein is a provenance and workflow management system for bioinformatics.

  • Categories

    • License

      GPL-3.0-only

    • Maintainer

      fred.ross@epfl.ch

    • Links

    • Versions

      • 0.3.3 Fri, 28 May 2010
      • 0.3.2 Wed, 26 May 2010
      • 0.3.1 Wed, 26 May 2010
      • 0.3 Wed, 26 May 2010
      • 0.2 Wed, 26 May 2010
      • 0.1 Wed, 26 May 2010

    Bein

    Bein is a provenance and workflow system for bioinformatics. Typically a bioinformaticist ends up with a dozen scripts and a thousand or so files from running the scripts with slightly varying parameters and no way to keep track of what came from where. Bein resolves this by keeping scripts, and their executions on inputs and the resulting outputs, in a database, and providing a web interface to the system.

    Organization of the build directory

    The build directory contains the following items:

    bein.cabal -- The equivalent of a Makefile for Haskell doc/ -- Documentation for the system priv/files/ -- A default directory for data files stored in Bein priv/scratch/ -- A default working directory for scripts run by Bein Setup.lhs -- Part of the infrastructure needed by bein.cabal. DO NOT EDIT. sql/ -- All code for setting up the PostgreSQL database src/ -- Haskell source code templates/ -- Template files for the web interface