epi-sim

A library for simulating epidemics, with a focus on phylodynamics and observation models.

Available models

Although this package supports the definition of new models there are some that are implemented already in the Epidemic.Model module. Implemented models include:

1. Birth-Death-Sampling-Catastrophe-Occurrence-Disaster (see Epidemic.Model.BDSCOD)
2. Inhomogeneous Birth-Death-Sampling (see Epidemic.Model.InhomogeneousBDS)
3. Logistic Birth-Death-Sampling-Disaster (see Epidemic.Model.LogisticBDSD)