@hackage hPDB1.2.0

Protein Databank file format library

hPDB

Haskell PDB file format parser.

Build Status Hackage

Protein Data Bank file format is a most popular format for holding biomolecule data.

This is a very fast parser:

  • below 7s for the largest entry in PDB - 1HTQ which is over 70MB
  • as compared with 11s of RASMOL 2.7.5,
  • or 2m15s of BioPython with Python 2.6 interpreter.

It is aimed to not only deliver event-based interface, but also a high-level data structure for manipulating data in spirit of BioPython's PDB parser.

Details on official releases are on Hackage

This package is also a part of Stackage - a stable subset of Hackage.

  • Installation

  • Dependencies (0)

  • Dependents (0)

    • Package Flags

      have-mmap
       (on by default)

      Use mmap to read input faster.

      have-sse2
       (on by default)

      Use -msse2 for faster code.

      have-text-format
       (on by default)

      Do not use text-format, since it may require double-conversion and thus linking of libstdc++ which may break compilation due to GHC bug #5289:

      http://ghc.haskell.org/trac/ghc/ticket/5289