epi-sim

A library for simulating stochastic epidemic models, with a focus on phylodynamics and observation models.

Epidemic events

A realisation of the model is represented by a list of EpidemicEvents which describe the events that occurred.

Available models

Although this package supports the definition of new models there are some that are implemented already in the Epidemic.Model module. Implemented models include:

1. Birth-Death-Sampling-Catastrophe-Occurrence-Disaster (see BDSCOD.hs)
2. Inhomogeneous Birth-Death-Sampling (see InhomogeneousBDS.hs)
3. Inhomogeneous Birth-Death-Sampling-Catastrophe-Occurrence-Disaster (see InhomogeneousBDSCOD.hs)
4. Logistic Birth-Death-Sampling-Disaster (see LogisticBDSD.hs)