@hackage BiobaseXNA0.8.1.0

Efficient RNA/DNA representations

Categories
- Bioinformatics
License
GPL-3.0-only
Maintainer
choener@tbi.univie.ac.at
Links
Versions
- 0.11.1.1 Fri, 4 Jun 2021
- 0.11.1.0 Thu, 3 Jun 2021
- 0.11.0.0 Fri, 14 Jun 2019
- 0.10.0.0 Thu, 23 Nov 2017
- 0.9.3.1 Mon, 6 Mar 2017
- 0.9.3.0 Thu, 1 Sep 2016

Installation
In your cabal file:
Dependencies (0)
Dependents (1)
@hackage/BiobaseBlast

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well as amino acid sequences.

Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)

http://dx.crossref.org/10.1093%2Fnar%2Fgkp011