FormalGrammars: A DSL for formal languages in Haskell

generalized Algebraic Dynamic Programming Homepage

The gADP homepage has a tutorial and example on how to write algorithms / grammars.

Ideas implemented here are described in a couple of papers:

1. Christian Hoener zu Siederdissen
   Sneaking Around ConcatMap: Efficient Combinators for Dynamic Programming
   2012, Proceedings of the 17th ACM SIGPLAN international conference on Functional programming
   paper preprint
2. Andrew Farmer, Christian Höner zu Siederdissen, and Andy Gill.
   The HERMIT in the stream: fusing stream fusion’s concatMap
   2014, Proceedings of the ACM SIGPLAN 2014 workshop on Partial evaluation and program manipulation.
   paper
3. Christian Höner zu Siederdissen, Ivo L. Hofacker, and Peter F. Stadler.
   Product Grammars for Alignment and Folding
   2014, IEEE/ACM Transactions on Computational Biology and Bioinformatics. 99
   paper
4. Christian Höner zu Siederdissen, Sonja J. Prohaska, and Peter F. Stadler
   Algebraic Dynamic Programming over General Data Structures
   2015, BMC Bioinformatics
   preprint
5. Maik Riechert, Christian Höner zu Siederdissen, and Peter F. Stadler
   Algebraic dynamic programming for multiple context-free languages
   2015, submitted
   preprint

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/