Changelog of @hackage/BiobaseXNA 0.11.1.1

0.11.0.1

  • version bump

0.11.0.0

0.10.0.0

  • redesigned Biobase.Secondary.Basepair

0.9.3.1

  • removed upper version bounds, bumped dependent versions
  • added d1Distance for fast basepair distance calculations

0.9.3.0

  • bigger version bump together with multiple ghc compatibility

0.9.2.1

  • stack.yaml, some version bumping

0.9.2.0

  • fixed overlapping instances in AA

0.9.1.0

  • introduction of pattern synonyms for letters in molecular alphabets
  • travis-ci integration

0.9.0.0

  • major cleanup of the XNA library: explicit encoding of RNA,DNA, or XNA (XNA contains both U and T)
  • IUPAC notation (degenerate nucleotides) has an efficient encoding as well
  • translation between XNA and protein (Biobase.Primary.Trans)
  • import Biobase.Primary to get everything under Primary.*
  • import Biobase.Secondary to get everything under Secondary.*
  • SubOptDistance now extends all structure lines of RNAsubopt with a third field, the distance
  • Diagrams provide methods to validate folding and cofolding secondary structure strings.
  • serialization capabilities for 'Letter's

0.8.3.0

  • bugfix version: use vector-th-unbox to generate unboxed vector instances

0.8.2.0

  • dotBracket -> unsafeDotBracket
  • new 'dotBracket' function works in the error monad

0.8.1.1

  • added T/U conversion functions

0.8.1.0

  • Biobase.Primary.IUPAC for degenerate base symbol conversion

0.8.0.0

  • Biobase.Codon -> Biobase.AAseq
  • and efficient encoding of AAseqs

0.7

  • updated to PrimitiveArray >= 0.5
  • added Codon table

0.6.2.0

  • Updated to PrimitiveArray >= 0.2.0.0