@hackage BiobaseHTTPTools1.0.0
Tools to query Bioinformatics HTTP services e.g. Entrez, Ensembl.
Categories
License
GPL-3.0-only
Maintainer
egg@informatik.uni-freiburg.de
Links
Versions
- 1.0.0 Tue, 28 May 2019
Installation
Tested Compilers
Dependencies (0)
- base >=4.5 && <5
- bytestring
- containers
- text
- BiobaseFasta ==0.2.0.0
- BiobaseHTTP >=1.1.0 Show all…
Dependents (0)
BiobaseHTTP provides tools to interface the Bioinformatics REST services, currently Entrez, Ensembl.
Usage instructions can be found in the README
Currently following Tools are included:
FetchSequences: Retrieves sequence in fasta format
AccessionToTaxId: Converts NCBI accession number to taxonomy id
GeneIdToGOTerms: Retrieve GOterms for a Ensembl GeneId
GeneIdToUniProtId Retrieves UniProtId for a Ensembl GeneId